Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 400

Length: 668
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:19 original size:3 final size:3

Alignment explanation


    Indices: 12--51  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

          2 ATCAATTTCA

                                                                 
         12 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C

         52 CCTTGTGTGG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
CTT

Found at i:408 original size:4 final size:4

Alignment explanation


    Indices: 399--424  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

        389 AGACTTAATG

                                            
        399 GTAT GTAT GTAT GTAT GTAT GTAT GT
          1 GTAT GTAT GTAT GTAT GTAT GTAT GT

        425 GTATTGAGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50


Consensus pattern (4 bp):   
GTAT

Done.