Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00101.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2713
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1076 original size:510 final size:512

Alignment explanation


    Indices: 117--1162  Score: 1898
    Period size: 510  Copynumber: 2.0  Consensus size: 512

        107 CAATTGCATG

                                                                             
        117 GCCAAGGTTTATGGTGCTCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGCATGAGAGTT
          1 GCCAAGGTTTATGGTGCTCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGCATGAGAGTT

                    *            *                                           
        182 ACGATTGTCATGGGTATCTCAGATTTTCGGAAACTTTGGCTTGCAGTCCATACACAAAATTTGAG
         66 ACGATTGTAATGGGTATCTCAAATTTTCGGAAACTTTGGCTTGCAGTCCATACACAAAATTTGAG

                 *                                                  *     *  
        247 GTGGAGAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCAGAACAACAA
        131 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAAAAA

                                                                             
        312 ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
        196 ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG

                                                                   *         
        377 CAGCAGCAGACAAACCGGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAGCTTATCCCA
        261 CAGCAGCAGACAAACCGGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA

                                                                             
        442 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
        326 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG

                                                                             
        507 GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT
        391 GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT

                                                                     
        572 CCTGTGATCTCTTCACAGTCATCGACT-G-GTCGCTTGCGAATAAGCCATTTGCGTC
        456 CCTGTGATCTCTTCACAGTCATCGACTGGAGTCGCTTGCGAATAAGCCATTTGCGTC

                                                                             
        627 GCCAAGGTTTATGGTGCTCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGCATGAGAGTT
          1 GCCAAGGTTTATGGTGCTCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGCATGAGAGTT

                                                      *                      
        692 ACGATTGTAATGGGTATCTCAAATTTTCGGAAACTTTGGCTTTCAGTCCATACACAAAATTTGAG
         66 ACGATTGTAATGGGTATCTCAAATTTTCGGAAACTTTGGCTTGCAGTCCATACACAAAATTTGAG

                              *                                              
        757 GTGGAAAGGGCCAAATGCGGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAAAAA
        131 GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAAAAA

                                                        *                    
        822 ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAACAGAGCAGTATTGGATTTCTG
        196 ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG

                   *     *    *                                             *
        887 CAGCAGCCGACAAGCCGGTGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCG
        261 CAGCAGCAGACAAACCGGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA

                                                     *                       
        952 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAGTCAGGTTGCTATTTATGCTTATG
        326 GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG

                                                                             
       1017 GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT
        391 GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT

                            *     *          *                        
       1082 CCTGTGATCTCTTCACTGTCATTGACTGGGAGTTGCTTGCGAATAAGCCATTTGCGTC
        456 CCTGTGATCTCTTCACAGTCATCGACT-GGAGTCGCTTGCGAATAAGCCATTTGCGTC

                        *   *      
       1140 GCCAAGGTTTATCGTGATCAAAT
          1 GCCAAGGTTTATGGTGCTCAAAT

       1163 CCCATCAGAA


Statistics
Matches: 514,  Mismatches: 19, Indels: 3
        0.96            0.04        0.01

Matches are distributed among these distances:
 510  466  0.91
 512    1  0.00
 513   47  0.09

ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Consensus pattern (512 bp):   
GCCAAGGTTTATGGTGCTCAAATGTGAGGCGAGGAACAAATATTTGAGCTATATGCATGAGAGTT
ACGATTGTAATGGGTATCTCAAATTTTCGGAAACTTTGGCTTGCAGTCCATACACAAAATTTGAG
GTGGAAAGGGCCAAATGCAGTGGGGAAGATGGGTTGGTGCACATAAAGAGCTGCCACAACAAAAA
ATACTGCAAACGAGTCAAAAATGTTTCCATCACTGGAAACTCAAAAGAGCAGTATTGGATTTCTG
CAGCAGCAGACAAACCGGAGGAAGGCCGATCCGAGGAGTCGTGCACGTTGTTCAAACTTATCCCA
GTGGACACTGCAACAAATAAGATCCGAATTATGCATGTGCAATCAGGTTGCTATTTATGCTTATG
GTGGGTAGATTCTCCAACGTTTAATAACTGTGTGTTGGCAAACTACAAAGTTTTCGATGGTAATT
CCTGTGATCTCTTCACAGTCATCGACTGGAGTCGCTTGCGAATAAGCCATTTGCGTC
Done.