Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00105.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27


Found at i:1495 original size:15 final size:15

Alignment explanation


    Indices: 1475--1534  Score: 86
    Period size: 15  Copynumber: 4.1  Consensus size: 15

       1465 TAGCAAAGAA

                   *       
       1475 GAACCCCTCACCTCT
          1 GAACCCCCCACCTCT

                         * 
       1490 GAACCCCCCACCTTT
          1 GAACCCCCCACCTCT

             *             
       1505 GTACCCCCCACCTCT
          1 GAACCCCCCACCTCT

                           
       1520 GAA-CCCCCACCTCT
          1 GAACCCCCCACCTCT

             
       1534 G
          1 G

       1535 GGAATCAGAA


Statistics
Matches: 40,  Mismatches: 5, Indels: 1
        0.87            0.11        0.02

Matches are distributed among these distances:
  14   12  0.30
  15   28  0.70

ACGTcount: A:0.18, C:0.55, G:0.08, T:0.18


Consensus pattern (15 bp):   
GAACCCCCCACCTCT

Found at i:1615 original size:25 final size:25

Alignment explanation


    Indices: 1581--1632  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       1571 AATTTTAAAA

                                     
       1581 AATATATTGTAAAAATTTTCATTTT
          1 AATATATTGTAAAAATTTTCATTTT

                                     
       1606 AATATATTGTAAAAATTTTCATTTT
          1 AATATATTGTAAAAATTTTCATTTT

              
       1631 AA
          1 AA

       1633 AGTTTTAATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50


Consensus pattern (25 bp):   
AATATATTGTAAAAATTTTCATTTT
Done.