Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00124.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 753

Length: 1256
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:891 original size:20 final size:21

Alignment explanation


    Indices: 841--892  Score: 70
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        831 CGCTTGGAGT

                     *           
        841 ACTCTTTTCGATATTACTCTA
          1 ACTCTTTTCAATATTACTCTA

               *            *    
        862 ACTTTTTTCAATATTATTCTA
          1 ACTCTTTTCAATATTACTCTA

                       
        883 A-TCTTTTCAA
          1 ACTCTTTTCAA

        893 ATCTGGGAAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  20    8  0.30
  21   19  0.70

ACGTcount: A:0.27, C:0.19, G:0.02, T:0.52


Consensus pattern (21 bp):   
ACTCTTTTCAATATTACTCTA
Done.