Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g00148.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699
Length: 1166
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Found at i:886 original size:149 final size:149
Alignment explanation
Indices: 705--990 Score: 362
Period size: 149 Copynumber: 1.9 Consensus size: 149
695 TGTAGGGAAC
* *
705 AATTATGTGCATTTTTGGCCTCCATCGAGGAACAAGCAAACCAGTTATCGAAAAA-AGTCGAGGG
1 AATTATGTGCATTTTTGGCCTCCATCGAGGAACAAACAAACCAGTTATCGAAAAAGA-TCCAGGG
***
769 TGTGGTTCGAAACATCAAAGAAGTTGAATCTAGAGATCATCACAGT-CA-TAATTTGTAGCATTC
65 TGCCATTCGAAACATCAAAGAAGTTGAATCTAGAGATCATCACA-TCCATTAATTTGTAGCATTC
*
832 ATGGTGTTCAAGATAATGGAG
129 ATGATGTTCAAGATAATGGAG
* * * * *
853 AATTATGTGCCTTTTTTGGCCTCCATCGAGGAACAAACACACCGGTTTTCGAAAACGATCCAGGG
1 AATTATGTG-CATTTTTGGCCTCCATCGAGGAACAAACAAACCAGTTATCGAAAAAGATCCAGGG
* *** ** *
918 TGCCATTCGGAACATCGGTGTGGTTGAATCTAGAGATCATCACATCCATTATTTTGTAGCATTCA
65 TGCCATTCGAAACATCAAAGAAGTTGAATCTAGAGATCATCACATCCATTAATTTGTAGCATTCA
983 TGATGTTC
130 TGATGTTC
991 TACCCTTCGA
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
148 10 0.09
149 83 0.72
150 23 0.20
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (149 bp):
AATTATGTGCATTTTTGGCCTCCATCGAGGAACAAACAAACCAGTTATCGAAAAAGATCCAGGGT
GCCATTCGAAACATCAAAGAAGTTGAATCTAGAGATCATCACATCCATTAATTTGTAGCATTCAT
GATGTTCAAGATAATGGAG
Done.