Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 787
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32


Found at i:679 original size:23 final size:23

Alignment explanation


    Indices: 653--779  Score: 159
    Period size: 23  Copynumber: 5.5  Consensus size: 23

        643 AAATGTTGTT

                                    
        653 AATTG-AGATGTTAAAGTGCTGCA
          1 AATTGAAG-TGTTAAAGTGCTGCA

                                  * 
        676 AATTGAAGTGTTTAAA-TGCTGTA
          1 AATTGAAGTG-TTAAAGTGCTGCA

                   *               
        699 AATTGAACTGTTAAAGTGCTGCA
          1 AATTGAAGTGTTAAAGTGCTGCA

                         *       * 
        722 AATTGAAGTGTTAGAGTGCTGTA
          1 AATTGAAGTGTTAAAGTGCTGCA

                 *      *    *     
        745 AATTGGAGTGTTTAAGTACTGCA
          1 AATTGAAGTGTTAAAGTGCTGCA

                        
        768 AATTGAAGTGTT
          1 AATTGAAGTGTT

        780 TAGTTGCT


Statistics
Matches: 89,  Mismatches: 12, Indels: 6
        0.83            0.11        0.06

Matches are distributed among these distances:
  22    5  0.06
  23   77  0.87
  24    7  0.08

ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35


Consensus pattern (23 bp):   
AATTGAAGTGTTAAAGTGCTGCA

Found at i:711 original size:46 final size:45

Alignment explanation


    Indices: 632--781  Score: 185
    Period size: 46  Copynumber: 3.3  Consensus size: 45

        622 TTCGCTATAC

                *    *      *   *                         
        632 TTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAA
          1 TTGAAGTGTTTAAATGCTGTAAATTGA-ATGTTAAAGTGCTGCAAA

                                                          
        678 TTGAAGTGTTTAAATGCTGTAAATTGAACTGTTAAAGTGCTGCAAA
          1 TTGAAGTGTTTAAATGCTGTAAATTGAA-TGTTAAAGTGCTGCAAA

                          *              *    *    *       
        724 TTGAAGTG-TTAGAGTGCTGTAAATTGGAGTGTTTAAGTACTGCAAA
          1 TTGAAGTGTTTA-AATGCTGTAAATT-GAATGTTAAAGTGCTGCAAA

                        
        770 TTGAAGTGTTTA
          1 TTGAAGTGTTTA

        782 GTTGCT


Statistics
Matches: 92,  Mismatches: 8, Indels: 7
        0.86            0.07        0.07

Matches are distributed among these distances:
  45    4  0.04
  46   83  0.90
  47    5  0.05

ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37


Consensus pattern (45 bp):   
TTGAAGTGTTTAAATGCTGTAAATTGAATGTTAAAGTGCTGCAAA

Done.