isoform.fa.s10882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Ga03g00158.F1
Parameters: 2 7 7 80 10 50 1000
Length:  4278

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269--396	48	2.7	48	86	0	166	21	42	9	25	1.83
377--487	42	2.5	42	88	8	150	35	36	13	15	1.87
377--711	48	7.4	45	77	8	193	31	37	13	17	1.88
494--582	27	3.5	26	70	17	71	21	47	5	25	1.72
271--673	186	2.2	186	89	0	619	28	38	11	20	1.88
594--711	42	2.8	42	96	0	218	34	32	18	14	1.91
408--822	228	1.8	228	92	1	697	30	39	11	18	1.87
1017--1101	27	3.4	26	71	18	81	28	50	1	20	1.55
1166--1245	24	3.3	24	69	19	67	27	48	1	22	1.58
1163--1296	27	5.4	27	68	22	105	29	49	1	20	1.58
695--1297	48	12.4	48	76	5	381	29	47	3	19	1.67
695--1248	147	3.8	147	87	1	747	29	47	3	19	1.67
1212--1294	24	3.5	24	69	18	73	31	48	1	19	1.57
1351--1394	6	7.3	6	86	0	61	18	77	2	2	0.98
1843--1922	36	2.2	36	90	0	124	25	40	10	25	1.86
1879--2150	114	2.4	113	93	2	456	28	38	9	22	1.86
2107--2195	36	2.5	36	84	0	106	22	42	11	23	1.85
2278--3772	48	31.2	48	73	9	908	29	47	4	19	1.68
2235--3550	144	9.2	144	76	7	1014	29	46	4	18	1.69
2887--3072	27	7.6	27	65	22	113	27	49	3	19	1.64
3132--3262	27	5.3	27	64	22	90	29	49	3	18	1.62
3443--3523	21	3.6	21	69	23	65	27	56	2	13	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3424--3551	27	5.2	27	64	27	95	31	50	1	16	1.54
3512--3588	27	3.1	26	69	21	74	32	48	0	19	1.49

Tables:   1

The End!