Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g00158.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2763
ACGTcount: A:0.29, C:0.38, G:0.10, T:0.23
Found at i:375 original size:36 final size:36
Alignment explanation
Indices: 328--407 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
318 GTACTATTAT
* * *
328 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTAC
1 AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
*
364 AAGTCACCACCTCCACCGTCACCAACTTATGTTTAC
1 AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
400 AAGTCACC
1 AAGTCACC
408 TCCACCTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.25, C:0.40, G:0.10, T:0.25
Consensus pattern (36 bp):
AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
Found at i:515 original size:114 final size:113
Alignment explanation
Indices: 364--635 Score: 456
Period size: 114 Copynumber: 2.4 Consensus size: 113
354 TTATGTTTAC
* *
364 AAGTCACCACCTCCACCG-TCACCAACTTATGTTTACAAGTCACCTCCACCTCCTGCGTACTACT
1 AAGTCTCCACCTCCACCGCTC-CC-ACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACT
* *
428 ACAAGTCTCCACCACCACCAAAGCATGTGGAACAGCCTCCATACTACTAT
64 ACAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
*
478 AAGTCTCCACCTCCACCAGCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTATGTACTACTA
1 AAGTCTCCACCTCCACC-GCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACTA
543 CAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
65 CAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
592 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTACAAGTCACC
1 AAGTCTCCACCTCCACC-GCTCCCACTTATGTTTACAAGTCACC
636 GCCTCCACCA
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
114 145 0.97
115 3 0.02
116 2 0.01
ACGTcount: A:0.28, C:0.39, G:0.10, T:0.23
Consensus pattern (113 bp):
AAGTCTCCACCTCCACCGCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACTAC
AAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
Found at i:641 original size:36 final size:36
Alignment explanation
Indices: 592--680 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 36
582 ATACTACTAT
* * *
592 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTAC
1 AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
* * *
628 AAGTCACCGCCTCCACCATCGCCGACTTATGTTTAC
1 AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
* *
664 AAGTCACCTCCACCACC
1 AAGTCACCACCTCCACC
681 TGTGTACTAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.22, C:0.43, G:0.11, T:0.24
Consensus pattern (36 bp):
AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
Found at i:815 original size:48 final size:48
Alignment explanation
Indices: 763--2257 Score: 908
Period size: 48 Copynumber: 31.2 Consensus size: 48
753 GCAGCCCCCG
* * *
763 TACTACTACAAGTCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* *
811 TACTATTACAAGTCCCCACCACCACCAGTTCA-C-TCTCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA--TCACCATCTCCACCTCCACCA
* * **** ** *
859 TACTACTACAAGTCCCCACCACCACCA-AAACATGAGGAACAACCTCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCAT-CTCCACCTCCACCA
* * * * * * *
907 TACTACTACAAATCTCCTCCTCCACCATCGCCATCTCCTCCACCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** * ** *** *
955 TACTACTACAAATCCCCACCACCACCA-AAATATGTAGAAGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCT-CCACCTCCACCA
* * * *
1003 TACTACTACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
1051 TACTACTACAAGTCCCCACCACCACCATCTCCATCACCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * * *
1099 TACTATTACAAATCACCC-CCACCACCATCGCCATCTCCTCATCCACCA
1 TACTACTACAAGTC-CCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** *** *
1147 TACTACTACAAGTCCCCACCACCACCGA--AACATGTAGAGGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACC-ATCACCATCTCCA-CCTCCACCA
*
1195 TACTACTACAAGTCTCCC-CCACCACCATCGA-CATCTCCTCCTCCACCA
1 TACTACTACAAGTC-CCCACCACCACCATC-ACCATCTCCACCTCCACCA
* * * * * *
1243 TACTATTACAAATCTCCTCCACCACCATCACCATCTCCTCCACCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** *** *
1291 TACTACTACAAGTCCCCACCACCACCGA--AACATGTAGAGGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACC-ATCACCATCTCCA-CCTCCACCA
* * * * * *
1339 TAC-ATCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCACCACCA
1 TACTA-CTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * *
1387 TACTATTACAAGTCCCCACCACCACCAGTTCA--TTCTCCATCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA--TCACCATCTCCACCTCCACCA
* * *
1435 TACTACTACAAGTCTCCACCACCACCAGT--CCACTCCCCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * *
1483 TACTACTACAAGTCTCCACCACCACCTTCTCCCTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * * ** ***
1531 TACTATTACAAGTCTCCACCACCACCA-AAACA-CGTAGAGGAGCC-CCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATC-TCCA-CCTCCACCA
* * * * * *
1578 TAC-ATCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCACCACCA
1 TACTA-CTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
1626 TACTATTACAAGTCCCCACCACCACCAGT--TCAT-TCCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCATCT-CCACCTCCACCA
* * * * *
1673 TACTACTACAAGTCTCCACCACCACCTTCTCCCTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * ** *** *
1721 TACTATTACAAGTCCCCACCACCACCA-AAACA-CGTAGAGAAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATC-TCCA-CCTCCACCA
* * * *
1769 TACATA-TACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TAC-TACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * *
1817 TATTATTACAAGTCCCCACCACCACCAGT--CCACTTTCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * * *
1865 TACTATTACAAGTCCCCTCCTCCACCATCGCCATCTCCTCCTCTACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
1913 TACTATTACAAATCCCCACCACCACCAGT--CCACTCTCCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
*
1961 TACTACTACAAATCCCCACCACCACCAGT--CCACTCTCCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * *
2009 TACTACTACAAATCCCCACCACCACCATC-TCATTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCA-TCTCCACCTCCACCA
* * * * * * * *
2057 TACTATTACAAATCACCC-CCACCTCCAGTGA-AAGCTCCAGCACCTACC-
1 TACTACTACAAGTC-CCCACCACCACCA-TCACCATCTCCACCTCC-ACCA
* * * * * * *
2105 TACCATTACAACTCCCCTCCTCCACCATCACCATCTCCTCCTCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
2153 TACTACTACAAATCTCCC-CCACCACCAGT--CCACTCTCCCCCACCACCA
1 TACTACTACAAGTC-CCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * * * * *
2201 TACTACTACAAATCTCCACCTCCTCCATCTCCCTCACCACCTCCTCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
2249 TACTACTAC
1 TACTACTAC
2258 CACTCACCTC
Statistics
Matches: 1119, Mismatches: 259, Indels: 138
0.74 0.17 0.09
Matches are distributed among these distances:
45 1 0.00
46 6 0.01
47 116 0.10
48 934 0.83
49 55 0.05
50 7 0.01
ACGTcount: A:0.29, C:0.48, G:0.04, T:0.19
Consensus pattern (48 bp):
TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
Found at i:885 original size:144 final size:144
Alignment explanation
Indices: 720--2035 Score: 1014
Period size: 144 Copynumber: 9.2 Consensus size: 144
710 CCACTTATGT
* * *
720 CTACAAGTCTCCACCACCACCAAAGCATGTAGAGCAGCCCCCGTACTACTACAAGTCTCCTCCAC
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCAC
785 CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
66 CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
850 CCACCACCATACTA
131 CCACCACCATACTA
* * * * * * *
864 CTACAAGTCCCCACCACCACCAAAACATG-AGGAACAACCTCCATACTACTACAAATCTCCTCCT
1 CTACAAGTCCCCACCACCACCAAAGCATGTA-GAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * ** * *
928 CCACCATCGCCATCTCCTCCACCACCATACTACTACAAATCCCCACCACCACCAAAAT-A-TGTA
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACC-AGTTCACTCTC
* ** *
991 GAAGAGCCCCCATACTA
129 CACCA-CCACCATACTA
* * * * * * *** ** * *
1008 CTACAAATCTCCTCCACCACCATCACCATCT-CCTCCTCCACCATACTACTACAAGTCCCCACCA
1 CTACAAGTCCCCACCACCACCA-AAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * * *
1072 CCACCATCTCCATCACCACCCCCACCATACTATTACAAATCACCC-CCACCACCA--TCGCCATC
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTC-CCCACCACCACCAGTTC-AC-TC
*
1134 TCC-TCATCCACCATACTA
127 TCCACCA-CCACCATACTA
* *
1152 CTACAAGTCCCCACCACCACCGAAA-CATGTAGAGGAGCCCCCATACTACTACAAGTCTCCCCCA
1 CTACAAGTCCCCACCACCACC-AAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * *
1216 CCACCATCGA-CATCTCCTCCTCCACCATACTATTACAAATCTCCTCCACCACCA--TCACCATC
65 CCACCATC-ACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCA-C-TC
*
1278 TCCTCCACCACCATACTA
127 TCCACCACCACCATACTA
* * *
1296 CTACAAGTCCCCACCACCACCGAAA-CATGTAGAGGAGCCCCCATAC-ATCTACAAATCTCCTCC
1 CTACAAGTCCCCACCACCACC-AAAGCATGTAGAGCAGCCCCCATACTA-CTACAAGTCTCCACC
* * *
1359 ACCACCATCGCCATCTCCTCCACCACCATACTATTACAAGTCCCCACCACCACCAGTTCATTCTC
64 ACCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTC
*
1424 CATCACCACCATACTA
129 CACCACCACCATACTA
* *** * *** *
1440 CTACAAGTCTCCACCACCACCAGTCCA-CT-CCCCACCCCCACCATACTACTACAAGTCTCCACC
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCA-GCCC-CCATACTACTACAAGTCTCCACC
* * * * * * *** * *
1503 ACCACCTTCTCCCTCACCACCTCCACCATACTATTACAAGTCTCCACCACCACCAAAACAC-GTA
64 ACCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTC
* **
1567 GAGGAGCC-CCATAC-A
129 CACCA-CCACCATACTA
* * * ** * **** * * *
1582 TCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCA-CCACCATACTATTACAAGTCCCCACC
1 -CTACAAGTCCCCACCACCACCAAAG-CATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACC
* * * * * * *
1646 ACCACCAGT--TCAT-TCCCACCACCACCATACTACTACAAGTCTCCACCACCACC-TTCTCCCT
64 ACCACCA-TCACCATCT-CCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGT-TCACT
* *
1707 CACCACCTCCACCATACTA
126 CTCCACCACCACCATACTA
* * * * * *
1726 TTACAAGTCCCCACCACCACCAAAACACGTAGAGAAGCCCCCATACATA-TACAAATCTCCTCCA
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATAC-TACTACAAGTCTCCACCA
* * *
1790 CCACCATCACCATCTCCTCCTCCACCATATTATTACAAGTCCCCACCACCACCAGTCCACTTTCC
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCC
1855 ACCACCACCATACTA
130 ACCACCACCATACTA
* * * ** * *** ** ** * * *
1870 TTACAAGTCCCCTCCTCCACCATCGCCATCT-CCTCCTCTACCATACTATTACAAATCCCCACCA
1 CTACAAGTCCCCACCACCACCAAAG-CATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * *
1934 CCACCAGT--CCACTCTCCACCCCCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCT
65 CCACCA-TCACCA-TCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCT
*
1997 CCACCTCCACCATACTA
128 CCACCACCACCATACTA
*
2014 CTACAAATCCCCACCACCACCA
1 CTACAAGTCCCCACCACCACCA
2036 TCTCATTCAC
Statistics
Matches: 936, Mismatches: 191, Indels: 90
0.77 0.16 0.07
Matches are distributed among these distances:
141 1 0.00
142 49 0.05
143 130 0.14
144 726 0.78
145 23 0.02
146 7 0.01
ACGTcount: A:0.30, C:0.47, G:0.05, T:0.19
Consensus pattern (144 bp):
CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCAC
CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
CCACCACCATACTA
Found at i:1413 original size:27 final size:27
Alignment explanation
Indices: 1372--1557 Score: 113
Period size: 27 Copynumber: 7.6 Consensus size: 27
1362 ACCATCGCCA
* *
1372 TCTCCTCCACCACCATACTATTACAAG
1 TCTCCACCACCACCATACTACTACAAG
* * *
1399 TCCCCACCACCACC--AGT--T-C-AT
1 TCTCCACCACCACCATACTACTACAAG
*
1420 TCTCCATCACCACCATACTACTACAAG
1 TCTCCACCACCACCATACTACTACAAG
1447 TCTCCACCACCACCAGT-C--C-AC---
1 TCTCCACCACCACCA-TACTACTACAAG
* *
1468 TCCCCACCCCCACCATACTACTACAAG
1 TCTCCACCACCACCATACTACTACAAG
**
1495 TCTCCACCACCACC-T--T-CT-C-CC
1 TCTCCACCACCACCATACTACTACAAG
* * *
1516 TCACCACCTCCACCATACTATTACAAG
1 TCTCCACCACCACCATACTACTACAAG
1543 TCTCCACCACCACCA
1 TCTCCACCACCACCA
1558 AAACACGTAG
Statistics
Matches: 117, Mismatches: 22, Indels: 40
0.65 0.12 0.22
Matches are distributed among these distances:
20 1 0.01
21 39 0.33
22 3 0.03
23 6 0.05
24 6 0.05
25 5 0.04
26 3 0.03
27 53 0.45
28 1 0.01
ACGTcount: A:0.27, C:0.49, G:0.03, T:0.20
Consensus pattern (27 bp):
TCTCCACCACCACCATACTACTACAAG
Found at i:1652 original size:27 final size:27
Alignment explanation
Indices: 1617--1747 Score: 90
Period size: 27 Copynumber: 5.3 Consensus size: 27
1607 GCCATCTCCT
1617 CCACCACCATACTATTACAAGTCCCCA
1 CCACCACCATACTATTACAAGTCCCCA
* *
1644 CCACCACC--A--GTT-C-A-TTCCCA
1 CCACCACCATACTATTACAAGTCCCCA
* *
1664 CCACCACCATACTACTACAAGTCTCCA
1 CCACCACCATACTATTACAAGTCCCCA
* ** *
1691 CCACCACC-T--T-CT-C-CCTCACCA
1 CCACCACCATACTATTACAAGTCCCCA
*
1712 CCTCCACCATACTATTACAAGTCCCCA
1 CCACCACCATACTATTACAAGTCCCCA
1739 CCACCACCA
1 CCACCACCA
1748 AAACACGTAG
Statistics
Matches: 76, Mismatches: 15, Indels: 26
0.65 0.13 0.22
Matches are distributed among these distances:
20 13 0.17
21 13 0.17
22 4 0.05
23 4 0.05
24 3 0.04
25 3 0.04
26 3 0.04
27 33 0.43
ACGTcount: A:0.29, C:0.50, G:0.03, T:0.18
Consensus pattern (27 bp):
CCACCACCATACTATTACAAGTCCCCA
Found at i:1952 original size:21 final size:21
Alignment explanation
Indices: 1928--2008 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 21
1918 TTACAAATCC
1928 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
* *
1949 CCACCCCCACCA-TACTACTACAAATCC
1 CCACCACCACCAGT-C--C-AC---TCT
1976 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
*
1997 CCACCTCCACCA
1 CCACCACCACCA
2009 TACTACTACA
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
20 1 0.02
21 25 0.53
23 1 0.02
24 4 0.09
25 1 0.02
27 14 0.30
28 1 0.02
ACGTcount: A:0.27, C:0.57, G:0.02, T:0.14
Consensus pattern (21 bp):
CCACCACCACCAGTCCACTCT
Found at i:1979 original size:27 final size:27
Alignment explanation
Indices: 1909--2036 Score: 95
Period size: 27 Copynumber: 5.2 Consensus size: 27
1899 CTCCTCCTCT
*
1909 ACCATACTATTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
* *
1936 ACCAGT-C--C-AC---TCTCCACCCCC
1 ACCA-TACTACTACAAATCCCCACCACC
1957 ACCATACTACTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
* *
1984 ACCAGT-C--C-AC---TCTCCACCTCC
1 ACCA-TACTACTACAAATCCCCACCACC
2005 ACCATACTACTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
2032 ACCAT
1 ACCAT
2037 CTCATTCACC
Statistics
Matches: 76, Mismatches: 9, Indels: 32
0.65 0.08 0.27
Matches are distributed among these distances:
20 2 0.03
21 28 0.37
23 2 0.03
24 8 0.11
25 1 0.01
27 33 0.43
28 2 0.03
ACGTcount: A:0.31, C:0.51, G:0.02, T:0.16
Consensus pattern (27 bp):
ACCATACTACTACAAATCCCCACCACC
Found at i:2072 original size:27 final size:26
Alignment explanation
Indices: 1997--2073 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 26
1987 AGTCCACTCT
*
1997 CCACCTCCACCATACTACTACAAATCC
1 CCACCTCCACCATACTA-TACAAATCA
* *
2024 CCACCACCACCAT-C--T-C-ATTCA
1 CCACCTCCACCATACTATACAAATCA
2045 CCACCTCCACCATACTATTACAAATCA
1 CCACCTCCACCATACTA-TACAAATCA
2072 CC
1 CC
2074 CCCACCTCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
21 15 0.38
22 2 0.05
23 1 0.03
25 1 0.03
26 2 0.05
27 18 0.46
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.19
Consensus pattern (26 bp):
CCACCTCCACCATACTATACAAATCA
Done.