Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2470
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:2436 original size:20 final size:20

Alignment explanation


    Indices: 2406--2450  Score: 83
    Period size: 20  Copynumber: 2.3  Consensus size: 20

       2396 TTGATGTTTG

                                
       2406 ATTGT-TGAATCTAGAATTT
          1 ATTGTATGAATCTAGAATTT

                                
       2425 ATTGTATGAATCTAGAATTT
          1 ATTGTATGAATCTAGAATTT

                  
       2445 ATTGTA
          1 ATTGTA

       2451 ATTGGAGAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19    5  0.20
  20   20  0.80

ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47


Consensus pattern (20 bp):   
ATTGTATGAATCTAGAATTT
Done.