Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00174.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2057
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33


Found at i:425 original size:21 final size:21

Alignment explanation


    Indices: 379--425  Score: 51
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        369 TCGGAATTGG

                                 
        379 GGTTTAATTTTTTTGGGTTGT
          1 GGTTTAATTTTTTTGGGTTGT

            *    *         *      
        400 TGTTTGATTTTTGTTTGGTT-T
          1 GGTTTAATTTTT-TTGGGTTGT

                 
        421 GGTTT
          1 GGTTT

        426 TTGATCTTTA


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  21   15  0.71
  22    6  0.29

ACGTcount: A:0.06, C:0.00, G:0.28, T:0.66


Consensus pattern (21 bp):   
GGTTTAATTTTTTTGGGTTGT

Found at i:428 original size:23 final size:22

Alignment explanation


    Indices: 386--430  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

        376 TGGGGTTTAA

                                  
        386 TTTTTTTGGGTTGTTGTTTGAT
          1 TTTTTTTGGGTTGTTGTTTGAT

                      *             
        408 TTTTGTTTGGTTTGGTT-TTTGAT
          1 TTTT-TTTGGGTT-GTTGTTTGAT

        431 CTTTAATTTC


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  22    4  0.20
  23   13  0.65
  24    3  0.15

ACGTcount: A:0.04, C:0.00, G:0.27, T:0.69


Consensus pattern (22 bp):   
TTTTTTTGGGTTGTTGTTTGAT
Done.