Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00175.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3464
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34


Found at i:3377 original size:6 final size:6

Alignment explanation


    Indices: 3361--3395  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       3351 TTTTGATGTA

                   *                                
       3361 TATATC GATATC TATATC TATATC TATATC TATAT
          1 TATATC TATATC TATATC TATATC TATATC TATAT

       3396 AATATATGTA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.34, C:0.14, G:0.03, T:0.49


Consensus pattern (6 bp):   
TATATC

Done.