Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00469.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2227
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:56 original size:25 final size:25

Alignment explanation


    Indices: 28--78  Score: 59
    Period size: 26  Copynumber: 2.0  Consensus size: 25

         18 TCTAATTTGT

                                      
         28 TCATAAAAATTTCA-AAAATAAAATA
          1 TCATAAAAATTT-AGAAAATAAAATA

                **                    
         53 TCATTTAAATTTAGTAAAATAAAATA
          1 TCATAAAAATTTAG-AAAATAAAATA

         79 ATGTAAATTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  24    1  0.05
  25   10  0.45
  26   11  0.50

ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33


Consensus pattern (25 bp):   
TCATAAAAATTTAGAAAATAAAATA

Found at i:171 original size:30 final size:30

Alignment explanation


    Indices: 136--194  Score: 100
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        126 ATATTAGTTC

                         *                
        136 AACATATTTTAATGTAAATAGAATGTGGTG
          1 AACATATTTTAATATAAATAGAATGTGGTG

                                 *       
        166 AACATATTTTAATATAAATAGCATGTGGT
          1 AACATATTTTAATATAAATAGAATGTGGT

        195 ACAAATTTAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37


Consensus pattern (30 bp):   
AACATATTTTAATATAAATAGAATGTGGTG
Done.