Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00181.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4362
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:762 original size:3 final size:3

Alignment explanation


    Indices: 748--787  Score: 53
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        738 GGCTGAGGGT

                  *                           *           *      
        748 GAA GAT GAA GAA GAA GAA GAA GAA GAC GAA GAA GAT GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G

        788 GTGATGATGA


Statistics
Matches: 31,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.57, C:0.03, G:0.35, T:0.05


Consensus pattern (3 bp):   
GAA

Found at i:808 original size:21 final size:21

Alignment explanation


    Indices: 730--800  Score: 70
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        720 AGATGAGGGT

                    * *   *      
        730 GATGAAGAGGCTGAGGGTGAA
          1 GATGAAGAAGATGAAGGTGAA

                       *    **   
        751 GATGAAGAAGAAGAAGAAGAA
          1 GATGAAGAAGATGAAGGTGAA

              *                 *
        772 GACGAAGAAGATGAAGGTGAT
          1 GATGAAGAAGATGAAGGTGAA

                    
        793 GATGAAGA
          1 GATGAAGA

        801 GGGTGAAGAA


Statistics
Matches: 38,  Mismatches: 12, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.46, C:0.03, G:0.39, T:0.11


Consensus pattern (21 bp):   
GATGAAGAAGATGAAGGTGAA
Done.