Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00185.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3727
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31


Found at i:2844 original size:22 final size:22

Alignment explanation


    Indices: 2816--2860  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2806 GTATTAGGAG

                         *        
       2816 TTAGATTGTATTTTGTCTCTTT
          1 TTAGATTGTATTTCGTCTCTTT

                                  
       2838 TTAGATTGTATTTCGTCTCTTT
          1 TTAGATTGTATTTCGTCTCTTT

             
       2860 T
          1 T

       2861 ATCCCTAAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.13, C:0.11, G:0.13, T:0.62


Consensus pattern (22 bp):   
TTAGATTGTATTTCGTCTCTTT
Done.