Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00218.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3039
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35


Found at i:2922 original size:31 final size:31

Alignment explanation


    Indices: 2886--2955  Score: 122
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       2876 CAGAAAAAAG

                                           
       2886 AAGACTAAGTTGATAAAAGATTTCAAATCCA
          1 AAGACTAAGTTGATAAAAGATTTCAAATCCA

                       *                   
       2917 AAGACTAAGTTTATAAAAGATTTCAAATCCA
          1 AAGACTAAGTTGATAAAAGATTTCAAATCCA

               *    
       2948 AAGGCTAA
          1 AAGACTAA

       2956 ATGTTATTTT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  31   37  1.00

ACGTcount: A:0.49, C:0.13, G:0.13, T:0.26


Consensus pattern (31 bp):   
AAGACTAAGTTGATAAAAGATTTCAAATCCA
Done.