Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00245.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 420

Length: 700
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30


Found at i:232 original size:13 final size:13

Alignment explanation


    Indices: 214--239  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        204 TGATTCAAAA

                         
        214 CCTGGAATCACGG
          1 CCTGGAATCACGG

                         
        227 CCTGGAATCACGG
          1 CCTGGAATCACGG

        240 TGTTGATGGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15


Consensus pattern (13 bp):   
CCTGGAATCACGG
Done.