Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00255.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2602
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:2228 original size:79 final size:79

Alignment explanation


    Indices: 2139--2364  Score: 382
    Period size: 79  Copynumber: 2.9  Consensus size: 79

       2129 ATCAAGTTCA

                                                                             
       2139 TAAATATTAAATATAAATATTTATGAGGATAATATTAAAAACATTGCAATATTAAAATTTTCCAA
          1 TAAATATTAAATATAAATATTTATGAGGATAATATTAAAAACATTGCAATATTAAAATTTTCCAA

                   * *    
       2204 CTAAATCTAGTCCG
         66 CTAAATCAAATCCG

                          *                           *            *         
       2218 TAAATATTAAATATGAATATTTATGAGGATAATATTAAAAACGTTGCAATATTAACATTTTCCAA
          1 TAAATATTAAATATAAATATTTATGAGGATAATATTAAAAACATTGCAATATTAAAATTTTCCAA

                          
       2283 CTAAATCAAATCCG
         66 CTAAATCAAATCCG

                                                             *               
       2297 TAAATATTAAATATGAAA-ATTTATGAGGATAATATTAAAAACATTGCACTATTAAAATTTTCCA
          1 TAAATATTAAATAT-AAATATTTATGAGGATAATATTAAAAACATTGCAATATTAAAATTTTCCA

                
       2361 ACTA
         65 ACTA

       2365 GGAAACCTGA


Statistics
Matches: 137,  Mismatches: 9, Indels: 2
        0.93            0.06        0.01

Matches are distributed among these distances:
  79  135  0.99
  80    2  0.01

ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35


Consensus pattern (79 bp):   
TAAATATTAAATATAAATATTTATGAGGATAATATTAAAAACATTGCAATATTAAAATTTTCCAA
CTAAATCAAATCCG
Done.