Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00265.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4010
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:1209 original size:17 final size:17

Alignment explanation


    Indices: 1184--1217  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1174 CTGCTAAGAC

                             
       1184 CTTGGTATCAGAAATCT
          1 CTTGGTATCAGAAATCT

                *     *      
       1201 CTTGTTATCATAAATCT
          1 CTTGGTATCAGAAATCT

       1218 GAGCAACAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41


Consensus pattern (17 bp):   
CTTGGTATCAGAAATCT
Done.