Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00481.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3051
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:731 original size:29 final size:29

Alignment explanation


    Indices: 668--745  Score: 77
    Period size: 30  Copynumber: 2.7  Consensus size: 29

        658 TTAGTAAAAG

                      *          **  *   
        668 TAAAATTATATTTTAATCTTTCTAAGTTA
          1 TAAAATTATAATTTAATCTTTAAAAATTA

                                           
        697 TAAAAATT-TAATTTAATCCTTTAAAAATTA
          1 T-AAAATTATAATTTAAT-CTTTAAAAATTA

                    *     *    
        727 TAAAATTAAAATTTTATCT
          1 TAAAATTATAATTTAATCT

        746 AACCCCCTAC


Statistics
Matches: 40,  Mismatches: 6, Indels: 6
        0.77            0.12        0.12

Matches are distributed among these distances:
  29   17  0.43
  30   23  0.57

ACGTcount: A:0.45, C:0.06, G:0.01, T:0.47


Consensus pattern (29 bp):   
TAAAATTATAATTTAATCTTTAAAAATTA
Done.