Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00298.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1707
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:1629 original size:32 final size:32

Alignment explanation


    Indices: 1583--1648  Score: 105
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       1573 TAATGTAACA

                                            
       1583 TAGCTGCTAAGAATTCAGGGTTTAAATAAGTT
          1 TAGCTGCTAAGAATTCAGGGTTTAAATAAGTT

                     *     **               
       1615 TAGCTGCTATGAATTTGGGGTTTAAATAAGTT
          1 TAGCTGCTAAGAATTCAGGGTTTAAATAAGTT

              
       1647 TA
          1 TA

       1649 TTCATGTATT


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.32, C:0.08, G:0.23, T:0.38


Consensus pattern (32 bp):   
TAGCTGCTAAGAATTCAGGGTTTAAATAAGTT
Done.