Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g00308.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3132
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Found at i:785 original size:146 final size:145
Alignment explanation
Indices: 511--801 Score: 415
Period size: 146 Copynumber: 2.0 Consensus size: 145
501 ATTATTCTCA
* * *
511 TTTGTTTGAATTTGTTGGTTTGTAGGGATGAATAATCTACTTATGTGCTTGTATTGTTGCTGGAT
1 TTTGTTTGAATTTGTTAGTGTGGAGGGATGAATAATCTACTTATGTGCTTGTATTGTTGCTGGAT
** * * * *
576 TTTTAAGTAGAAATTGAGTGTTGTAATACTGAATGATTGAAAATTGTTTTAATTGGAACAGCAGT
66 TTTTAAGTAGAAATCAAGTATTCTAATACTGAATGATTG-AAATTGTTTTAATAGGAAAAGCAGT
641 CTTGGGGTTGATAGCT
130 CTTGGGGTTGATAGCT
*
657 TTTGTTTGAATTTGTTAGTGTGGAGGGATGAATAATCTACTTCTGTGCTTGTATTGTTGCTGGA-
1 TTTGTTTGAATTTGTTAGTGTGGAGGGATGAATAATCTACTTATGTGCTTGTATTGTTGCTGGAT
* **
721 TTTTAAGTCGAAATCAAGTATTCTAATGTTGAATGATTG-AATTGTGTTTAAATAGGCAAAAGCA
66 TTTTAAGTAGAAATCAAGTATTCTAATACTGAATGATTGAAATTGT-TTT-AATAGG-AAAAGCA
785 GTCTTGGGGTTGATAGC
128 GTCTTGGGGTTGATAGC
802 ATATTTGGAC
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
143 6 0.05
144 3 0.02
145 37 0.29
146 83 0.64
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (145 bp):
TTTGTTTGAATTTGTTAGTGTGGAGGGATGAATAATCTACTTATGTGCTTGTATTGTTGCTGGAT
TTTTAAGTAGAAATCAAGTATTCTAATACTGAATGATTGAAATTGTTTTAATAGGAAAAGCAGTC
TTGGGGTTGATAGCT
Done.