Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00315.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3012
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:236 original size:31 final size:31

Alignment explanation


    Indices: 200--264  Score: 130
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        190 AGATTTATAA

                                           
        200 TTTAATTATTTTTTCCTTGTTTTTATAGTGT
          1 TTTAATTATTTTTTCCTTGTTTTTATAGTGT

                                           
        231 TTTAATTATTTTTTCCTTGTTTTTATAGTGT
          1 TTTAATTATTTTTTCCTTGTTTTTATAGTGT

               
        262 TTT
          1 TTT

        265 TATAGTGTTA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.15, C:0.06, G:0.09, T:0.69


Consensus pattern (31 bp):   
TTTAATTATTTTTTCCTTGTTTTTATAGTGT
Done.