Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00318.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34


Found at i:244 original size:21 final size:21

Alignment explanation


    Indices: 218--261  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        208 CCCTCTTTCA

                                 
        218 ACTCCGACACAAACAAAAATG
          1 ACTCCGACACAAACAAAAATG

                      *          
        239 ACTCCGACACTAACAAAAATG
          1 ACTCCGACACAAACAAAAATG

              
        260 AC
          1 AC

        262 AATAGCAAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.50, C:0.30, G:0.09, T:0.11


Consensus pattern (21 bp):   
ACTCCGACACAAACAAAAATG
Done.