Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00328.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:295 original size:15 final size:15

Alignment explanation


    Indices: 275--305  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        265 CATATGAATA

                           
        275 ACTATTCCTAAAACG
          1 ACTATTCCTAAAACG

                           
        290 ACTATTCCTAAAACG
          1 ACTATTCCTAAAACG

             
        305 A
          1 A

        306 GGTCAGCCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26


Consensus pattern (15 bp):   
ACTATTCCTAAAACG
Done.