Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00487.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3889
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:2936 original size:118 final size:117

Alignment explanation


    Indices: 2789--3018  Score: 379
    Period size: 117  Copynumber: 2.0  Consensus size: 117

       2779 TATTTCCGGT

                                                                             
       2789 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
          1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAA-CCAAGCAC

                                         * *                     
       2854 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
         65 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC

                          ****                                               
       2907 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCAAGCACC
          1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCAAGCACC

                                              **           
       2972 CTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
         66 CTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC

       3019 ATGGAAAACA


Statistics
Matches: 104,  Mismatches: 8, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
 117   52  0.50
 118   52  0.50

ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23


Consensus pattern (117 bp):   
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCAAGCACC
CTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Done.