Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00352.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:38 original size:6 final size:5

Alignment explanation


    Indices: 2--36  Score: 54
    Period size: 5  Copynumber: 7.0  Consensus size: 5

          1 A

                                                      
          2 GTTTT -TTTT GTTTT GTTTT GTTTT GTTTTT GTTTT
          1 GTTTT GTTTT GTTTT GTTTT GTTTT G-TTTT GTTTT

         37 TGCTGTTTAT


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   4    4  0.14
   5   19  0.68
   6    5  0.18

ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83


Consensus pattern (5 bp):   
GTTTT
Done.