Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00362.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2580
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:316 original size:4 final size:4

Alignment explanation


    Indices: 307--337  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

        297 GAAGAAATTG

                                                   
        307 AAAC AAAC AAAC AAAC AAAC AAAC AAA- AAAC
          1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC

        338 TGAATCGTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   23  0.88

ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00


Consensus pattern (4 bp):   
AAAC

Found at i:981 original size:3 final size:3

Alignment explanation


    Indices: 973--1003  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        963 ACAGCCACAC

                                 *                   
        973 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT T
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T

       1004 TTCTCTCAAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68


Consensus pattern (3 bp):   
TAT

Done.