Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00362.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1902
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:316 original size:4 final size:4

Alignment explanation


    Indices: 307--337  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

        297 GAAGAAATTG

                                                   
        307 AAAC AAAC AAAC AAAC AAAC AAAC AAA- AAAC
          1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC AAAC

        338 TGAATCGTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.12
   4   23  0.88

ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00


Consensus pattern (4 bp):   
AAAC

Done.