Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00372.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5180
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30


Found at i:1779 original size:12 final size:12

Alignment explanation


    Indices: 1759--1789  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       1749 GGAAAACAGG

                        
       1759 AAAGAAGATGAA
          1 AAAGAAGATGAA

                *       
       1771 AAAGGAGATGAA
          1 AAAGAAGATGAA

                   
       1783 AAAGAAG
          1 AAAGAAG

       1790 CGAAAAGATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.65, C:0.00, G:0.29, T:0.06


Consensus pattern (12 bp):   
AAAGAAGATGAA
Done.