Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00391.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:972 original size:16 final size:17

Alignment explanation


    Indices: 951--983  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        941 GTGAGACTTA

                        *    
        951 CAAT-GGAGAAACCAAG
          1 CAATGGGAGAAAACAAG

                             
        967 CAATGGGAGAAAACAAG
          1 CAATGGGAGAAAACAAG

        984 AGGGGAAACA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.52, C:0.15, G:0.27, T:0.06


Consensus pattern (17 bp):   
CAATGGGAGAAAACAAG
Done.