Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00400.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33


Found at i:1072 original size:48 final size:48

Alignment explanation


    Indices: 1002--1097  Score: 165
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        992 GCGGGAGGAA

                                                            
       1002 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT
          1 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT

                         *            *           *         
       1050 GGTGGTGGCCAAGTCGTTGATGCTGCTGCATAAAATCAGCATTCATCT
          1 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT

       1098 CTGGTATCGT


Statistics
Matches: 45,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  48   45  1.00

ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27


Consensus pattern (48 bp):   
GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT
Done.