Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00399.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2867
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:966 original size:48 final size:48

Alignment explanation


    Indices: 896--991  Score: 165
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        886 GCGGGAGGAA

                                                            
        896 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT
          1 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT

                         *            *           *         
        944 GGTGGTGGCCAAGTCGTTGATGCTGCTGCATAAAATCAGCATTCATCT
          1 GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT

        992 CTGGTATCGT


Statistics
Matches: 45,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  48   45  1.00

ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27


Consensus pattern (48 bp):   
GGTGGTGGCCAAGCCGTTGATGCTGCCGCATAAAATCAACATTCATCT
Done.