Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00405.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 503

Length: 839
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34


Found at i:572 original size:6 final size:6

Alignment explanation


    Indices: 561--585  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        551 TTATAGTTTA

                                         
        561 TTAATT TTAATT TTAATT TTAATT T
          1 TTAATT TTAATT TTAATT TTAATT T

        586 GTATTCAAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (6 bp):   
TTAATT

Done.