Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00414.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 364

Length: 607
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29


Found at i:551 original size:4 final size:4

Alignment explanation


    Indices: 542--590  Score: 98
    Period size: 4  Copynumber: 12.2  Consensus size: 4

        532 TTATTAGCCA

                                                                       
        542 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG

             
        590 T
          1 T

        591 GTGTTTAATG


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   45  1.00

ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51


Consensus pattern (4 bp):   
TATG

Done.