Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00430.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4301
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.37


Found at i:831 original size:18 final size:19

Alignment explanation


    Indices: 808--844  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        798 CCCCTTTAAA

                               
        808 TTATTTCA-CTATTTATTT
          1 TTATTTCATCTATTTATTT

                       *       
        826 TTATTTCATCTTTTTATTT
          1 TTATTTCATCTATTTATTT

        845 CATCTTTACT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.19, C:0.11, G:0.00, T:0.70


Consensus pattern (19 bp):   
TTATTTCATCTATTTATTT

Found at i:841 original size:13 final size:13

Alignment explanation


    Indices: 823--851  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        813 TCACTATTTA

                         
        823 TTTTTATTTCATC
          1 TTTTTATTTCATC

                         
        836 TTTTTATTTCATC
          1 TTTTTATTTCATC

               
        849 TTT
          1 TTT

        852 ACTTTTTGCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72


Consensus pattern (13 bp):   
TTTTTATTTCATC

Done.