Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00526.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4965
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33


Found at i:2761 original size:39 final size:39

Alignment explanation


    Indices: 2718--2797  Score: 160
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2708 ATCCGAGGAA

                                                   
       2718 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
          1 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG

                                                   
       2757 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
          1 GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG

              
       2796 GA
          1 GA

       2798 AACTATCGGG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   41  1.00

ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30


Consensus pattern (39 bp):   
GATTTCCTCGTGGAATGAAATTATTGATAGAGTAGAGAG
Done.