Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00562.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 564

Length: 941
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27


Found at i:582 original size:21 final size:21

Alignment explanation


    Indices: 558--614  Score: 69
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        548 GCAACTCCTC

                 *             * 
        558 CAACAACAACAACAGCAACTG
          1 CAACATCAACAACAGCAACAG

                *             *  
        579 CAACTTCAACAACAGCAAGAG
          1 CAACATCAACAACAGCAACAG

                  *        
        600 CAACATGAACAACAG
          1 CAACATCAACAACAG

        615 TTACAGTTGA


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.51, C:0.30, G:0.12, T:0.07


Consensus pattern (21 bp):   
CAACATCAACAACAGCAACAG
Done.