Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00573.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 554

Length: 924
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:810 original size:36 final size:36

Alignment explanation


    Indices: 763--833  Score: 142
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        753 TTTATCTCTC

                                                
        763 TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT
          1 TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT

                                               
        799 TAGATTTCATCATTTCTATTTCCATTGTAATAAGA
          1 TAGATTTCATCATTTCTATTTCCATTGTAATAAGA

        834 GTCTTCTGAG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.31, C:0.14, G:0.08, T:0.46


Consensus pattern (36 bp):   
TAGATTTCATCATTTCTATTTCCATTGTAATAAGAT
Done.