Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00574.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4934
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:4259 original size:25 final size:24

Alignment explanation


    Indices: 4206--4267  Score: 63
    Period size: 25  Copynumber: 2.5  Consensus size: 24

       4196 TAGTTCGTAT

                        *            
       4206 GAGCTTATCGATTCACAGCTCGTGA
          1 GAGCTTATCGATACACAGCTC-TGA

                          *          
       4231 GAGCTTATCGATACTCAGCT-TAGA
          1 GAGCTTATCGATACACAGCTCT-GA

                    *    
       4255 GGAGCTTACCGAT
          1 -GAGCTTATCGAT

       4268 TATCGCTCAT


Statistics
Matches: 32,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  23    1  0.03
  24    2  0.06
  25   29  0.91

ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Consensus pattern (24 bp):   
GAGCTTATCGATACACAGCTCTGA
Done.