Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00584.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1310
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35


Found at i:1161 original size:7 final size:7

Alignment explanation


    Indices: 1149--1181  Score: 52
    Period size: 7  Copynumber: 5.0  Consensus size: 7

       1139 AAAATCCTTC

                   
       1149 TTCTTTT
          1 TTCTTTT

                   
       1156 TTCTTTT
          1 TTCTTTT

                   
       1163 TTCTTTT
          1 TTCTTTT

                   
       1170 TT-TTTT
          1 TTCTTTT

                   
       1176 TT-TTTT
          1 TTCTTTT

       1182 GAGATTACCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   10  0.38
   7   16  0.62

ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91


Consensus pattern (7 bp):   
TTCTTTT

Found at i:1181 original size:17 final size:17

Alignment explanation


    Indices: 1146--1179  Score: 54
    Period size: 15  Copynumber: 2.1  Consensus size: 17

       1136 TACAAAATCC

                             
       1146 TTCTTCTTTTTTCTTTT
          1 TTCTTCTTTTTTCTTTT

                             
       1163 TTCTT-TTTTTT-TTTT
          1 TTCTTCTTTTTTCTTTT

              
       1178 TT
          1 TT

       1180 TTGAGATTAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.35
  16    6  0.35
  17    5  0.29

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (17 bp):   
TTCTTCTTTTTTCTTTT
Done.