Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00585.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32


Found at i:1641 original size:19 final size:19

Alignment explanation


    Indices: 1606--1643  Score: 51
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1596 TTTTGAATAA

                      *        
       1606 CTGTTAGTAGGTTGTTAAG
          1 CTGTTAGTAGATTGTTAAG

                                
       1625 CTGTTAGT-GATTCGTTAAG
          1 CTGTTAGTAGATT-GTTAAG

       1644 GCGATGATTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  18    3  0.18
  19   14  0.82

ACGTcount: A:0.21, C:0.08, G:0.29, T:0.42


Consensus pattern (19 bp):   
CTGTTAGTAGATTGTTAAG
Done.