Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00588.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 800
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33


Found at i:61 original size:3 final size:3

Alignment explanation


    Indices: 53--89  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

         43 TCAAACCTTT

                                                             
         53 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T

         90 GCTGCTGCTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTC

Done.