Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00611.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4479
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31


Found at i:2625 original size:18 final size:19

Alignment explanation


    Indices: 2604--2644  Score: 52
    Period size: 18  Copynumber: 2.3  Consensus size: 19

       2594 AACACCATTA

                                
       2604 TTCAAGAGG-GAG-CTACTG
          1 TTCAAG-GGAGAGACTACTG

                               
       2622 TTC-AGGGAGAGACTACTG
          1 TTCAAGGGAGAGACTACTG

                 
       2640 TTCAA
          1 TTCAA

       2645 AAGGAGATTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 5
        0.80            0.00        0.20

Matches are distributed among these distances:
  16    2  0.10
  17    5  0.25
  18   12  0.60
  19    1  0.05

ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24


Consensus pattern (19 bp):   
TTCAAGGGAGAGACTACTG
Done.