Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00626.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3900
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:3409 original size:18 final size:17

Alignment explanation


    Indices: 3388--3443  Score: 51
    Period size: 18  Copynumber: 3.1  Consensus size: 17

       3378 ATCTGAAGAT

                              
       3388 GATGATAATGATGATGAG
          1 GATGA-AATGATGATGAG

                  *           
       3406 GATGAGGATGATGATGA-
          1 GATGA-AATGATGATGAG

            *                  
       3423 AATCGAAATTGATGATGAG
          1 GAT-GAAA-TGATGATGAG

              
       3442 GA
          1 GA

       3444 ATCTGAGAGT


Statistics
Matches: 30,  Mismatches: 5, Indels: 5
        0.75            0.12        0.12

Matches are distributed among these distances:
  17    3  0.10
  18   26  0.87
  19    1  0.03

ACGTcount: A:0.39, C:0.02, G:0.34, T:0.25


Consensus pattern (17 bp):   
GATGAAATGATGATGAG
Done.