Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00632.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2348
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31


Found at i:2202 original size:12 final size:12

Alignment explanation


    Indices: 2185--2226  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       2175 AAACTGTGGG

                        
       2185 ATTTTTTATTTT
          1 ATTTTTTATTTT

                         
       2197 ATTTTTTATTTTT
          1 ATTTTTTA-TTTT

                         
       2210 AATTTTTT-TTTT
          1 -ATTTTTTATTTT

            *    
       2222 CTTTT
          1 ATTTT

       2227 GTGGAGCATA


Statistics
Matches: 27,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  11    4  0.15
  12   12  0.44
  13    4  0.15
  14    7  0.26

ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83


Consensus pattern (12 bp):   
ATTTTTTATTTT

Found at i:2210 original size:18 final size:18

Alignment explanation


    Indices: 2185--2226  Score: 57
    Period size: 19  Copynumber: 2.3  Consensus size: 18

       2175 AAACTGTGGG

                  *            
       2185 ATTTTTTATTTTATTTTTT
          1 ATTTTTAATTTT-TTTTTT

                              
       2204 ATTTTTAATTTTTTTTTT
          1 ATTTTTAATTTTTTTTTT

            *    
       2222 CTTTT
          1 ATTTT

       2227 GTGGAGCATA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  18   10  0.48
  19   11  0.52

ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83


Consensus pattern (18 bp):   
ATTTTTAATTTTTTTTTT
Done.