Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00645.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:439 original size:21 final size:21

Alignment explanation


    Indices: 417--455  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        407 TTTGGGATTA

                                 
        417 AAAT-ATGAAAATGATAATCT
          1 AAATGATGAAAATGATAATCT

                               
        437 AAATGATGAAAATGATAAT
          1 AAATGATGAAAATGATAAT

        456 TATTTTTAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20    4  0.22
  21   14  0.78

ACGTcount: A:0.56, C:0.03, G:0.13, T:0.28


Consensus pattern (21 bp):   
AAATGATGAAAATGATAATCT

Found at i:1178 original size:23 final size:23

Alignment explanation


    Indices: 1148--1195  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1138 AGCAAGCAAA

                                   
       1148 GAGCTTTGGCATTTTGTTAGTTT
          1 GAGCTTTGGCATTTTGTTAGTTT

                                   
       1171 GAGCTTTGGCATTTTGTTAGTTT
          1 GAGCTTTGGCATTTTGTTAGTTT

              
       1194 GA
          1 GA

       1196 TATTGGATAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.15, C:0.08, G:0.27, T:0.50


Consensus pattern (23 bp):   
GAGCTTTGGCATTTTGTTAGTTT
Done.