Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00645.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 829

Length: 1382
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:532 original size:21 final size:21

Alignment explanation


    Indices: 510--548  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        500 TTTGGGATTA

                                 
        510 AAAT-ATGAAAATGATAATCT
          1 AAATGATGAAAATGATAATCT

                               
        530 AAATGATGAAAATGATAAT
          1 AAATGATGAAAATGATAAT

        549 TATTTTTAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20    4  0.22
  21   14  0.78

ACGTcount: A:0.56, C:0.03, G:0.13, T:0.28


Consensus pattern (21 bp):   
AAATGATGAAAATGATAATCT

Found at i:1271 original size:23 final size:23

Alignment explanation


    Indices: 1241--1288  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1231 AGCAAGCAAA

                                   
       1241 GAGCTTTGGCATTTTGTTAGTTT
          1 GAGCTTTGGCATTTTGTTAGTTT

                                   
       1264 GAGCTTTGGCATTTTGTTAGTTT
          1 GAGCTTTGGCATTTTGTTAGTTT

              
       1287 GA
          1 GA

       1289 TATTGGATAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.15, C:0.08, G:0.27, T:0.50


Consensus pattern (23 bp):   
GAGCTTTGGCATTTTGTTAGTTT
Done.