Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00648.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28


Found at i:937 original size:13 final size:13

Alignment explanation


    Indices: 919--950  Score: 64
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        909 TTCGGGAGCG

                         
        919 AGGGGAGCTTCAA
          1 AGGGGAGCTTCAA

                         
        932 AGGGGAGCTTCAA
          1 AGGGGAGCTTCAA

                  
        945 AGGGGA
          1 AGGGGA

        951 TCAAGTGAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.31, C:0.12, G:0.44, T:0.12


Consensus pattern (13 bp):   
AGGGGAGCTTCAA
Done.