Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00683.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Found at i:599 original size:26 final size:26

Alignment explanation


    Indices: 547--599  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        537 TTTACAGTTT

                                *     
        547 TACCCCTAGGTGATAAATTATCGAAA
          1 TACCCCTAGGTGATAAATTACCGAAA

                        *          *   
        573 TACCCCTAGG-GTTAAATTGACCTAAA
          1 TACCCCTAGGTGATAAATT-ACCGAAA

             
        599 T
          1 T

        600 GCATATTTGA


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  25    7  0.30
  26   16  0.70

ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28


Consensus pattern (26 bp):   
TACCCCTAGGTGATAAATTACCGAAA
Done.