Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00684.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4176
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:561 original size:33 final size:34

Alignment explanation


    Indices: 494--561  Score: 120
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        484 CGAATCAAAG

                        *                     
        494 ACTACAAAATTCTAATTCATAATATTTTTTTATT
          1 ACTACAAAATTCAAATTCATAATATTTTTTTATT

                                              
        528 ACTACAAAATTCAAATTCATAATA-TTTTTTATT
          1 ACTACAAAATTCAAATTCATAATATTTTTTTATT

             
        561 A
          1 A

        562 TGTGTTGGAA


Statistics
Matches: 33,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  33   10  0.30
  34   23  0.70

ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47


Consensus pattern (34 bp):   
ACTACAAAATTCAAATTCATAATATTTTTTTATT

Found at i:2027 original size:39 final size:39

Alignment explanation


    Indices: 1984--2060  Score: 118
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       1974 CCCCAGTCAG

                              *  *                 
       1984 TCAACAAAATGCAAAATTTACTAGAATGCTTAGTGGGAT
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT

                       *               *          
       2023 TCAACAAAATGGAAAATTAACCAGAATTCTTAGTGGGA
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGA

       2061 CTGAAAGGAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  39   34  1.00

ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26


Consensus pattern (39 bp):   
TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
Done.